Training materials
Difficulty level: Intermediate or Not specified
and Authors: Avans Hogeschool or Janick Mathys or Mehmet Tekman or Michelle Brazas or Wendi Bacon or abretaud
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hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
slides
An introduction to scRNA-seq data analysis
•• intermediateTranscriptomics Single Cell -
Slides
Development in Galaxy - Prerequisites for building software/conda packages