Training materials
Difficulty level: Intermediate
and Authors: Avans Hogeschool or Brandon Pickett or Delphine Lariviere or Malachi Griffith or Marius van den Beek or Michelle Brazas or Sergio Martínez Cuesta
-
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Creating, Editing and Importing Galaxy Workflows
•• intermediateUsing Galaxy and Managing your Data workflows -
hands-on tutorial
Using Workflow Parameters
•• intermediateUsing Galaxy and Managing your Data workflows -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly