Training materials
Authors: Anup Kumar or Fouad Yousif or Jonathan Karr or Maria Lehtivaara or Melanie Föll or Wendi Bacon or carpentries-incubator or erasche
-
hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
carpentries-incubator/R-ecology-lesson-intermediate
-
carpentries-incubator/gitlab-novice
-
carpentries-incubator/fair-for-leaders
-
carpentries-incubator/python_packaging
-
carpentries-incubator/scrna-seq-analysis