Training materials
Authors: Anthony Bretaudeau or Jan Slifka or Mehmet Tekman or Pratik Jagtap or Simon Bray or Yvan Le Bras or allegra.via Via or nekrut
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
slides
Introduction to DNA Methylation data analysis
• beginnerEpigenomics Epigenetics -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
slides
Introduction to Variant analysis
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial