Training materials
Resource type: hands-on tutorial
and Authors: Anthony Bretaudeau or Gary Bader or John Chilton or Malachi Griffith or Manuel Corpas or Maria Doyle
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hands-on tutorial
Genome annotation with Helixer
•• intermediateGenome Annotation eukaryota helixer jbrowse1 -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
Genome Assembly Quality Control
•• intermediateSequence assembly Assembly assembly quality control -
hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
Functional annotation of protein sequences
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Maker
••• advancedGenome Annotation eukaryote gmod jbrowse1 maker -
hands-on tutorial
Genome annotation with Maker (short)
•• intermediateGenome Annotation eukaryote gmod jbrowse1 maker -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
CRISPR screen analysis
• beginnerCRISPR Genome Annotation cell line essential genes genome editing -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote