Training materials
Difficulty level: Beginner
and Authors: Anthony Bretaudeau or Donny Vrins or Frédéric de Lamotte or Jessica Kirkpatrick krkptrc2@illinois.edu or John Chilton or Lauren Dupuis or Paul Yorke or Wolfgang Maier
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hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
Somatic Variant Discovery from WES Data Using Control-FREEC
• beginnerGenetic variation Variant Analysis -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Mapping and molecular identification of phenotype-causing mutations
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Identification of somatic and germline variants from tumor and normal sample pairs
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
• beginnerGenetic variation Variant Analysis cyoa -
hands-on tutorial
Functional annotation of protein sequences
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Debugging Galaxy
• beginnerSoftware engineering Development in Galaxy