Training materials
Authors: Anthony Bretaudeau or Bazante Sanders or Björn Grüning or Delphine Lariviere or Erasmus+ Programme or The GOBLET Foundation
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hands-on tutorial
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
hands-on tutorial
Genome annotation with Helixer
•• intermediateGenome Annotation eukaryota helixer jbrowse1 -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Running a workshop as instructor
• beginnerTeaching and Hosting Galaxy training -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration