Training materials
Authors: Anne Fouilloux or Bazante Sanders or Canadian Bioinformatics Workshops or Jessica Kirkpatrick krkptrc2@illinois.edu or Maria Levchenko or Pavankumar Videm or Pratik Jagtap or Simon Gladman
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Introduction to climate data
• beginnerClimate -
slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Galaxy on the Cloud
• beginnerGalaxy Server administration -
slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
slides
uWSGI
• beginnerGalaxy Server administration