Training materials
Authors: Anne Fouilloux or Anthony Bretaudeau or David Wishart or Egon Willighagen or Helen Brown or Laura Biggins or Wendi Bacon or stortebecker
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
slides
Introduction to climate data
• beginnerClimate -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Creating InChIKeys for IUPAC names
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hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics