Training materials
Authors: Anna Syme or Jüri Reimand or Mehmet Tekman or Samaha, Georgina (orcid: 0000-0003-0419-1476) or Saskia Lawson-Tovey or erasche
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
WEBINAR: Getting started with RNAseq: Transforming raw reads into biological insights
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WORKSHOP: Unlocking nf-core - customising workflows for your research
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WEBINAR: Pro tips for scaling bioinformatics workflows to HPC
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WORKSHOP: Make your bioinformatics workflows findable and citable
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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WORKSHOP: RNA-Seq: reads to differential genes and pathways