Training materials
Content provider: GTN
and Authors: Anna Syme or Daniel Blankenberg or Donny Vrins or Fouad Yousif or Malachi Griffith or Matthias Fahrner or Tuur Muyldermans
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slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Gearing towards production
• beginnerGalaxy Server administration -
hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Text-mining with the SimText toolset
• beginnerStatistics and probability Statistics and machine learning interactive-tools