Training materials
Authors: Anna Syme or Christine Staiger or David Wishart or Frédéric de Lamotte or Krzysztof Poterlowicz or Samaha, Georgina (orcid: 0000-0003-0419-1476) or Wendi Bacon or shiltemann
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
EWAS Epigenome-Wide Association Studies Introduction
• beginnerEpigenomics Epigenetics -
hands-on tutorial
FAIRification of an RNAseq dataset
•• intermediateFAIR clinical data -
hands-on tutorial
Data management in Medicinal Chemistry
• beginnerComputational chemistry FAIR Data, Workflows, and Research computational-chemistry data-management fair medicinal-chemistry -
hands-on tutorial
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerBioimaging FAIR REMBI -
hands-on tutorial
FAIR Bioimage Metadata
• beginnerFAIR bioimage Bioimage Metadata -
hands-on tutorial
FAIR Galaxy Training Material
• beginnerContributing to the Galaxy Training Material fair gtn training -
hands-on tutorial
FAIR data management solutions
•• intermediateFAIR Data management