Training materials
Authors: Anna Syme or Anthony Bretaudeau or Jessica Kirkpatrick krkptrc2@illinois.edu or Maria Doyle or Marta Lloret Llinares or Terri Attwood or Wendi Bacon
-
Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
Hands-on for 'Large genome assembly and polishing' tutorial
-
hands-on tutorial
Hands-on for 'Comparing inferred cell compositions using MuSiC deconvolution' tutorial
-
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
-
hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
-
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Refining Genome Annotations with Apollo (eukaryotes)' tutorial
•• intermediategenome-annotation eukaryote cyoa -
hands-on tutorial
Hands-on for 'Microbial Variant Calling' tutorial
-
hands-on tutorial
Hands-on for 'Genome annotation with Maker' tutorial
••• advancedgenome-annotation eukaryote