Training materials
Scientific topics: Sequence analysis
and Authors: Anna Syme or Anthony Bretaudeau or Cristóbal Gallardo or Eija Korpelainen @eija, ekorpelainen@gmail.com or Jessica Kirkpatrick krkptrc2@illinois.edu or Melanie Föll or Terri Attwood
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hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Mapping
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis -
Bioinformatics - the Power of Computers in Biology: A Practical Guide