Training materials
Authors: Anika Erxleben or Bérénice Batut or Daniel Blankenberg or Manuel Corpas or SIB Swiss Institute of Bioinformatics or Saskia Hiltemann or Timothy J. Griffin or erasche
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Data Manipulation Olympics - SQL
• beginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
hands-on tutorial
Data Manipulation Olympics - JQ
• beginnerSoftware engineering Foundations of Data Science cyoa json -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
Creation of an interactive Galaxy tools table for your community
• beginnerSoftware engineering Community Development in Galaxy SIG