Training materials
Authors: Andrew Mason or Björn Grüning or Maria Doyle or Personalized Health Informatics Group or allegra.via Via or pajanne
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hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Running a workshop as instructor
• beginnerTeaching and Hosting Galaxy training -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
hands-on tutorial
FAIRification of an RNAseq dataset
•• intermediateFAIR clinical data -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
slides
Galaxy from an administrator's point of view
• beginnerGalaxy Server administration -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization