Training materials
Scientific topics: Software engineering
and Authors: András Aszódi or Boris Steipe or Eija Korpelainen or Fotis E. Psomopoulos or Jessica Kirkpatrick krkptrc2@illinois.edu or Nicola Soranzo or Vasilis Lenis
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hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
slides
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy -
slides
Tool Dependencies and Conda
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
Python programming primer