Training materials
Difficulty level: Beginner
and Authors: Anamaria Crisan or Emma Leith or Laura Leroi or Philippe Lemercier or Timothy J. Griffin
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics