Training materials
Authors: Anamaria Crisan or Anthony Bretaudeau or Bioinformatics, Rockefeller University or Delphine Lariviere or Michelle Brazas or Wandrille Duchemin or Wendi Bacon or erxleben
-
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
RockefellerUniversity/RU_tidyverse_core
-
RockefellerUniversity/RU_reproducibleR
-
RockefellerUniversity/IGV_course
-
RockefellerUniversity/RU_GenomicVariants
-
RockefellerUniversity/RU_VisualizingGenomicsData