Training materials
Authors: Alexandre Cormier or Boris Steipe or Egon Willighagen or Kathi Zarnack or Mijke Jetten or Wendi Bacon or carpentries-incubator or erasche
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
Presentation
Workshop FAIR & Data stewardship for the ITN NUTRIOME project (2024)
• beginnerNutritional science Data management FAIR data Data handling Analysis data stewardship data life cycle Training FAIR Nutrition -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
carpentries-incubator/R-ecology-lesson-intermediate
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carpentries-incubator/gitlab-novice
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carpentries-incubator/fair-for-leaders
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carpentries-incubator/python_packaging