Training materials
Contributors: Anton Nekrutenko
and Authors: Alexandre Cormier or Anton Nekrutenko or Egon Willighagen or Guillermo Rangel Pineros
and Resource type: Jupyter notebook or Tutorial or hands-on tutorial
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hands-on tutorial
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy prokaryote vgp -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
Using dataset collections
•• intermediateUsing Galaxy and Managing your Data collections -
hands-on tutorial
Searching Your History
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
NGS data logistics
• beginnerIntroduction to Galaxy Analyses
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