Training materials
Authors: Alexander Botzki or Jessica Kirkpatrick krkptrc2@illinois.edu or Mark Fernandes or Personalized Health Informatics Group or Tuur Muyldermans or pajanne
-
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2 -
e-learning
Introduction to Protein Structure Analysis
-
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
-
Presentation
Preserve, publish and share your data
-
Presentation
Reusing existing data
-
Presentation, Vignette, Video
Research Data Management in Life Sciences
• beginnerData management