Training materials
Authors: Alexander Botzki or Christoph Stritt or Simon Gladman
and Resource type: Jupyter notebook or educational materials or hands-on tutorial
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hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
Hands-on for 'M. tuberculosis Variant Analysis' tutorial
•• intermediatevariant-analysis prokaryote one-health -
hands-on tutorial
Hands-on for 'Microbial Variant Calling' tutorial
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hands-on tutorial
Hands-on for 'Genome annotation with Prokka' tutorial
• beginnergenome-annotation prokaryote -
hands-on tutorial
Hands-on for 'Unicycler Assembly' tutorial
• beginnerassembly prokaryote -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Tree thinking for tuberculosis evolution and epidemiology' tutorial
• beginnerevolution prokaryote one-health phylogenetics -
hands-on tutorial
Hands-on for 'Identifying tuberculosis transmission links: from SNPs to transmission clusters' tutorial
•• intermediateevolution prokaryote one-health
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