Training materials
Authors: Alexander Botzki or Andrew Mason or Bernardo Clavijo or Eija Korpelainen or Erwan Corre or Friederike Ehrhart or Jared Simpson or Julie Sullivan or Kathi Zarnack or Maria Victoria . or Paul Yorke or Wendi Bacon or nekrut or shiltemann
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
FAIRification of an RNAseq dataset
•• intermediateFAIR clinical data -
ekorpela/cloud-vm-workshop
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tutorial
TeSS, how can I help you?
• beginnerFAIR OPEN Bioinformatics Teaching TeSS -
hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics