Training materials
Difficulty level: Intermediate
and Authors: Alex Ostrovsky or Personalized Health Informatics Group or Simon Andrews or Tharindu Senapathi
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Analysis of molecular dynamics simulations
•• intermediateComputational chemistry -
hands-on tutorial
Running molecular dynamics simulations using NAMD
•• intermediateComputational chemistry -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Analysing bisulfite methylation sequencing data
•• intermediateDNA methylation -
RNA-Seq Analysis
•• intermediateRNA-Seq -
Plotting complex figures with R
•• intermediateGraph plotting R Programming Babraham Institute