Training materials
Authors: Alex Ostrovsky or CRUK CI Bioinformatics Core or Lincoln Stein or SIB Swiss Institute of Bioinformatics or Wendi Bacon or erasche
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
sib-swiss/spatial-transcriptomics-training
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Enzymes: Extracting Biological Insight Using UniProt
• beginner -
Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
UNIX Shell Scripting in Life Sciences
•• intermediateprogramming training mark ibberson group -
Multiomics Data Analysis and Integration
• beginnerdata integration multiomics data analysis -
sib-swiss/reproducible-analysis-training
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bioinformatics-core-shared-training/nextflow_september_2021