Training materials
Difficulty level: Beginner
and Authors: Alex Ostrovsky or AstraZeneca or Gary Bader or Jessica Kirkpatrick krkptrc2@illinois.edu or Saskia Hiltemann or Stéphanie Robin
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Introduction to image analysis using Galaxy' tutorial
• beginnerimaging HeLa -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Hands-on for 'Data Manipulation Olympics' tutorial
• beginnerintroduction cyoa -
hands-on tutorial
Galaxy Basics for everyone
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Quality Control
• beginnerSequence analysis