Training materials
Difficulty level: Intermediate
and Licence: Creative Commons Attribution 4.0 International
and Authors: Alberto Pascual-García or Aleksandra Nenadic or Fotis E. Psomopoulos or Jessica Kirkpatrick krkptrc2@illinois.edu or Lars Juhl Jensen or Marta Lloret Llinares
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
Intermediate Research Software Development Skills In Python
•• intermediateintermediate Coding software engineering Carpentries Incubator -
hands-on tutorial
Introduction to Machine Learning using R
•• intermediateStatistics and probability Statistics and machine learning interactive-tools -
hands-on tutorial
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
Advanced Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation