Training materials
Authors: Aidan Budd or Maria Lehtivaara or Marius van den Beek or Nicola Soranzo or Personalized Health Informatics Group or Yvan Le Bras or bgruening or stortebecker
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slides
Introduction to DNA Methylation data analysis
• beginnerEpigenomics Epigenetics -
slides
Galactic Database
• beginnerGalaxy Server administration -
slides
Introduction to Variant analysis
• beginnerGenetic variation Variant Analysis -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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hands-on tutorial
Champs blocs indicators
• beginnerEcology