Training materials
Target audience: Students
and Authors: Aidan Budd or Hans-Rudolf Hotz or Helena Rasche or Instituto Gulbenkian de Ciência or Martin Čech or Mikael Linden or Wendi Bacon or Yvan Le Bras
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Data Manipulation Olympics - SQL
• beginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
hands-on tutorial
Data Manipulation Olympics - JQ
• beginnerSoftware engineering Foundations of Data Science cyoa json -
hands-on tutorial
Ploting a Microbial Genome with Circos
• beginnerVisualisation -
slides
Visualisations in Galaxy
• beginnerVisualisation -
slides
JBrowse
• beginnerVisualisation -
slides
Introduction to DNA Methylation data analysis
• beginnerEpigenomics Epigenetics