Training materials
Authors: Aidan Budd or Cristóbal Gallardo or Egon Willighagen or Mehmet Tekman or Melanie Föll or allegra.via Via or bgruening
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Creating InChIKeys for IUPAC names
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hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial