Training materials
Authors: Aidan Budd or Bruno Gaeta or Martin Čech or Matthias Fahrner or Sergio Martínez Cuesta or Timothy J. Griffin or Wendi Bacon or bioinformatics.ca
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
Gearing towards production
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
slides
Galaxy Troubleshooting
• beginnerGalaxy Server administration -
slides
Galactic Database
• beginnerGalaxy Server administration -
bioinformaticsdotca/BMB_2024
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bioinformaticsdotca/AMB_2024
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bioinformaticsdotca/IDE_2024