Training materials
Authors: Aidan Budd or Anup Kumar or Bazante Sanders or Cristóbal Gallardo or Gary Van Domselaar or Lincoln Stein or The Gulbenkian Training Programme in Bioinforma... or Yvan Le Bras
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hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
slides
Introduction to DNA Methylation data analysis
• beginnerEpigenomics Epigenetics -
slides
Introduction to Variant analysis
• beginnerGenetic variation Variant Analysis -
GTPB/ABSTAT18
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GTPB/IBIP19