Training materials
Authors: Aidan Budd or Anna Syme or Cristóbal Gallardo or Egon Willighagen or Instituto Gulbenkian de Ciência or Jared Simpson or Teaching materials at the Harvard Chan Bioinfor... or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
GTPB/ABSTAT18
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GTPB/IBIP19