Training materials
Authors: Aidan Budd or Anika Erxleben or Delphine Lariviere or Eija Korpelainen or Fotis E. Psomopoulos or Wendi Bacon or pajanne or stortebecker
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
hands-on tutorial
Asynchronous training
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Train-the-Trainer: putting it all together
• beginnerTeaching and Hosting Galaxy training -
slides
Introduction to Transcriptomics
• beginnerTranscriptomics -
ekorpela/cloud-vm-workshop
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Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022