Training materials
Scientific topics: Data quality management or Data visualisation or Sequence assembly
and Authors: A. Solomon Kurz or Anton Nekrutenko or Lars Juhl Jensen or Rosello, Fernando (orcid: 0000-0003-3885-8777) or Williams, Sarah
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ASKurz/Statistical_Rethinking_with_brms_ggplot2_and_the_tidyverse_2_ed
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WORKSHOP: R: fundamental skills for biologists
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hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation