Training materials
Authors: Anne Segonds-Pichon or Martin Čech or NBIS - National Bioinformatics Infrastructure S... or The Gulbenkian Training Programme in Bioinforma... or Wendi Bacon or pajanne or shiltemann
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
Gearing towards production
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
slides
Galaxy Troubleshooting
• beginnerGalaxy Server administration -
slides
Galactic Database
• beginnerGalaxy Server administration -
NBISweden/module-openrefine-dm-practices
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NBISweden/module-data-publication-dm-practices
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NBISweden/module-metadata-dm-practices