Training materials
Authors: Anne Segonds-Pichon or Emma Leith or Jared Simpson or Malachi Griffith or Mehmet Tekman or Melanie Föll
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell