Training materials
Authors: Anne Segonds-Pichon or Anup Kumar or Björn Grüning or Krzysztof Poterlowicz or The Gulbenkian Training Programme in Bioinforma... or Wendi Bacon or pajanne
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hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Running a workshop as instructor
• beginnerTeaching and Hosting Galaxy training -
slides
EWAS Epigenome-Wide Association Studies Introduction
• beginnerEpigenomics Epigenetics -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
hands-on tutorial
FAIRification of an RNAseq dataset
•• intermediateFAIR clinical data