Training materials
Difficulty level: Intermediate
and Authors: Alexander Botzki | https://orcid.org/0000-0001... or Avans Hogeschool or Denise Slenter or Friederike Ehrhart or Janick Mathys or Jesse Harrison
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hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'SQL with R' tutorial
•• intermediatedata-science SQL R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediatedata-science SQL Python jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Advanced CLI in Galaxy' tutorial
•• intermediatedata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'SQL Educational Game - Murder Mystery' tutorial
•• intermediatedata-science game SQL jupyter-notebook -
Tutorial
Tutorial on working with computing clusters
•• intermediateHPC -
Tutorial
Tutorial on using MPI with containers
•• intermediateMPI Containers Computer Programming Documentation and help -
hands-on tutorial
NGS analysis
•• intermediateSequencing NGS Next Generation Sequencing