Training materials
Authors: @posit-pbc or Daniel Blankenberg or David Wishart or Gary Van Domselaar or Jessica Kirkpatrick krkptrc2@illinois.edu or SIB Swiss Institute of Bioinformatics or Timothy J. Griffin or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Gearing towards production
• beginnerGalaxy Server administration -
sib-swiss/spatial-transcriptomics-training
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Enzymes: Extracting Biological Insight Using UniProt
• beginner -
Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
wesm/pydata-book
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UNIX Shell Scripting in Life Sciences
•• intermediateprogramming training mark ibberson group