NGS introduction to file formats

NGS introduction to file formats

Keywords

HTS-introduction, FASTQ, BAM, VCF, WIG, CRAM, GFF3

Authors

  • Frederik Coppens (@frcop)

Type

  • Lecture

Description

This sub-module gives an overview of the most used file formats in Next Generation Sequencing analysis

Aims

The aim of this sub-module is to make you aware of the different file formats commonly used in NGS data analysis and their features.

Prerequisites

  • None

Target audience

beginner, biologist

Learning objectives

  • List file formats used in NGS
  • Discuss the features of data formats, focussing on FastQ files and alignment files

Materials

  • NGSintroduction2fileformats.pdf

Data

*not applicable

Timing

2h

Content stability

Stable

Technical requirements

  • None

Literature references

  • None

Keywords: HTS-introduction, FASTQ, BAM, VCF, WIG, CRAM, GFF3

Authors: Frederik Coppens @frcop

NGS introduction to file formats https://tess.elixir-europe.org/materials/ngs-introduction-to-file-formats This sub-module gives an overview of the most used file formats in Next Generation Sequencing analysis HTS-introduction, FASTQ, BAM, VCF, WIG, CRAM, GFF3