Graphical & Computational Modelling of Biological Pathways

  1. Introduction

  2. Many Views of A Pathway(Lecture)

  3. Pathway Models & Pathway Types (Lecture)

  4. Sources of ‘Pathway Data’ (Lecture)

  5. Issues (Lecture)

  6. SBGN (Lecture)

  7. mEPN (Lecture)

  8. Practical Session: Pathway to Pathway Construction - yED(1)

  9. Practical Session: Pathway to Pathway Construction - yED(2)

  10. Practical Session: Pathway to Pathway Construction - yED(3)

  11. Practical Session: IFNB Pathway Description & Diagram

  12. Practical Session: IFNB Pathway Description & Diagram (Cont.)

  13. Framework Map of Macrophage Signalling Pathways (Lecture)

  14. Analysis & Visualization of Rule-Based Stochastic Flow (Lecture)

  15. Petri nets, Basis of The Flow of Tokens(lecture)

  16. Practical Session: SPN Simulation

  17. Practical Session: SPN Simulation (Cont.)

  18. Sample Case: The Influenza Virus & Macrophage Diagram (Lecture)

Keywords: Graphical modelling, Roslin Institute

Difficulty level: Beginner

Licence: Other (Not Open)

Authors: Tom Freeman

Graphical & Computational Modelling of Biological Pathways https://tess.elixir-europe.org/materials/graphical-computational-modelling-of-biological-pathways-d0b38ce1-0e2e-4ba9-9e0c-39c6af558782 Lecture by professor Tom Freeman. Filmed at The Roslin Institute, The University of Edinburgh, March 2015 Graphical modelling, Roslin Institute