These tutorials take you from the pre-processed matrix to cluster plots and gene expression values. You can pick whether to follow the Scanpy or Seurat tutorials - they will accomplish the same thing and generate the same results, so follow whichever you prefer!

Time estimation: 6 hours

Learning objectives:

• Interpret quality control plots to direct parameter decisions
• Repeat analysis from matrix to clustering
• Identify decision-making points
• Appraise data outputs and decisions
• Explain why single cell analysis is an iterative (i.e. the first plots you generate are not final, but rather you go back and re-analyse your data repeatedly) process
• Interpret quality control plots to direct parameter decisions -Repeat analysis from matrix to clustering to labelling clusters
• Identify decision-making points -Appraise data outputs and decisions -Explain why single cell analysis is an iterative process (i.e. the first plots you generate are not final, but rather you go back and re-analyse your data repeatedly)