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4 events found

Organizer: NanoCommons  or European Joint Programme on... 

  • International Summer School on Rare Disease Registries and FAIRification of Data

    23 - 27 September 2019

    Roma, Italy

    International Summer School on Rare Disease Registries and FAIRification of Data https://tess.elixir-europe.org/events/international-summer-school-on-rare-disease-registries-and-fairification-of-data Registries are key resources in order to increase timely and accurate diagnosis, improve patients management, tailor treatments, facilitate clinical trials, support healthcare planning and speed up research. This course is composed of two training modules: The first module “Rare Disease Registries” starts on September 23 till September 25, 2019, during these three days participants will learn (a) what resources are needed for the establishment / maintenance of a high quality registry (b) the features of successful strategies to ensure (i) long-time sustainability of the registry, (ii) quality, (iii) legal and ethical issues in compliance with the EU General Data Protection Regulation and (iv) FAIR principles The second module “FAIRification of data”, starts on September 26 till September 27, 2019 during these two days participants, working with IT-trainers, will make use case data FAIR. The potential of a FAIR registry, as the basis for cross resource questions, will be demonstrated by executing a query across the use cases that become FAIR. In this part a time slot will be allocated to discuss FAIR data management and FAIR project planning. 2019-09-23 09:00:00 UTC 2019-09-27 18:00:00 UTC European Joint Programme on Rare Diseases (EJP-RD), Istituto Superiore di Sanità of Italy Via Giano della Bella, 34, Roma, Italy Via Giano della Bella, 34 Roma Città Metropolitana di Roma Italy Rare diseases Istituto Superiore di Sanità claudio.carta@iss.it [] Cliniciansmedical specialistsregistry curatorsdatabase managershealthcare professionals rare disease patients representatives workshops_and_courses first_come_first_servedregistration_of_interest Rare DiseasesRegistryethical issues
  • Online Jaqpot Hackathon

    3 June 2020

    Online Jaqpot Hackathon https://tess.elixir-europe.org/events/online-jaqpot-hackathon Under the subtitle “Take your research from the bench to the community by making your models available as a web service”, attendees learned how to use the Jaqpot suite and python to go from data to model, starting from a common CSV file. Jaqpot is a computational platform for in silico modelling of chemical compounds, that provides both access to its services both over a User Interface (GUI) and an Application Programming Interface (API). It is a cloud-ready application that uses the benefits of Java, R and Python, having incorporated functionality by various established and open-source machine learning and data analysis toolkits, while algorithms in any programming algorithm can be added to Jaqpot. Attached you find the following presentations: 1. Intro to NanoCommons by Martin Himly, PLUS 2. Electronic Lab Notebooks by Iseult Lynch, UoB 3. NanoCommons Knowledgebase by Dieter Maier, Biomax 4. Jaqpot Suite by Philip Doganis, NTUA 2020-06-03 10:00:00 UTC 2020-06-03 13:30:00 UTC NanoCommons [] info@nanocommons.eu [] early stage researchers in nanosafetymodellers for nanosafety predictionexperienced researchers in nanosafety workshops_and_courses [] Modelingdata FAIRnesstoxicity predictione-toolsnanoinformatics
  • Getting into using ELNs for experimental and computational workflows

    14 July 2020

    Getting into using ELNs for experimental and computational workflows https://tess.elixir-europe.org/events/getting-into-using-elns-for-experimental-and-computational-workflows On Tuesday, July 14th 2020, the NanoCommons team, in a joint initiative with the NanoSafety Cluster, is offering an interactive online workshop on implementing Electronic Laboratory Notebooks (ELNs) for nanosafety assessment. Under the subtitle “Getting into using ELNs for experimental and computational workflows”, you will learn how to establish a workflow using Scinote-based electronic lab notebooks. This starts with an introduction to the Scinote inventory and continues with hands-on instructions on how to manage, modify, create, and import protocols for assays. Tasks can be defined and assigned to different users and/or groups. Finally, data (incl. all relevant metadata) can be exported resulting in reports that facilitate data FAIRness. Technology advancement, the emergence of nanoinformatics and FAIR data principles implementation have increased the need for high-quality datasets. To achieve this, the data produced through academia, industry and regulatory bodies needs to be properly curated, to contain sufficient metadata and to be semantically annotated. In this way, data can be accessible and readable from both humans and machines, making it possible to be queried and mined using appropriate systems. One of the main objectives of NanoCommons is to promote the FAIR data principles, cross-project collaboration and data interoperability. This will make it possible to offer the nanosafety community high quality data that can be combined to produce big datasets and be used in novel modelling, machine learning, deep learning and AI techniques. The University of Birmingham (UoB) aims to achieve this by implementing data management processes covering the entire data lifecycle, and by moving the data curation process to the data generators. Capturing the data and metadata as they are produced will save substantial time and resources, while resulting in higher quality datasets. ELNs can be implemented, through cloud services or locally, into everyday experimental practice streamlining and simplifying experimental and computational workflows, practices and data capturing. 2020-07-14 10:00:00 UTC 2020-07-14 14:00:00 UTC NanoCommons [] [] Bench biologistscomputational scientists workshops_and_courses [] electronic lab notebook
  • International Summer School on Rare Disease Registries and FAIRification of Data

    28 September - 2 October 2020

    International Summer School on Rare Disease Registries and FAIRification of Data https://tess.elixir-europe.org/events/international-summer-school-on-rare-disease-registries-and-fairification-of-data-810a68d3-7fff-4daa-86bc-f2e6ea7a4603 Registries are key resources in order to increase timely and accurate diagnosis, improve patients management, tailor treatments, facilitate clinical trials, support healthcare planning and speed up research. This course is composed of two training modules: - during the first three days module *28-30 September 2020*, participants will learn (a) what resources are needed for the establishment/maintenance of a high quality registry (b) the features of successful strategies to ensure (i) long-time sustainability of the registry, (ii) quality, (iii) legal and ethical issues in compliance with the EU General Data Protection Regulation - during the second two days module “FAIRification of data”, *1-2 October 2020*, participants will deepen their knowledge on the single steps of the FAIRification of data and will discover the potential of FAIR registries. In this part a time slot will be allocated to discuss FAIR data management and FAIR project planning. 2020-09-28 14:00:00 UTC 2020-10-02 17:30:00 UTC European Joint Programme on Rare Diseases (EJP-RD), Istituto Superiore di Sanità of Italy Rare diseases Istituto Superiore di Sanità claudio.carta@iss.it [] Cliniciansmedical specialistsregistry curatorsdatabase managershealthcare professionals rare disease patients representatives 30 workshops_and_courses first_come_first_servedregistration_of_interest Rare Diseasesdata FAIRnessRegistryethical issues

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