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and Keywords: Containers or Galaxy or Healthcare or Metabolites or Single cell sequencing or Transcriptomics or Workflows or • New developments in technology
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OnlineWorkshops and coursesLarge-scale analytical workflows on the cloud using Galaxy and Globus
16 November 2016 @ 15:00 - 16:00
Online
Workflows Genomics High-throughput sequencing Whole genome sequencing Cloud Galaxy Globus NGS Next generation sequencing data analysis -
OnlineWorkshops and coursesCWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF
28 February 2018 @ 14:00 - 15:00
Online
Workflows Genomics Bioinformatics CWL HPC LSF -
OnlineWorkshops and coursesH3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 1
20 August 2018 @ 15:00 - 16:30
Online
Bioinformatics GWAS study Workflows Computational biology Genotyping experiment Population genomics Nextflow Docker H3ABioNet GWAS Genotyping array analysis bioinformatics Africa Population Genomics Reproducible Science H3Africa genotyping array High performance computing Cloud computing GWAS workflow H3ABioNet GWAS 2018 Lecture Series -
OnlineWorkshops and coursesEthics/ELSI considerations - From FAIR to fair data sharing
15 April 2021
Online
Data handling Data Data governance Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Bioactivity data Drug-like compounds BioStudies Database EBI Search Finding data World Sight Day Eye development Eye disease Open software Metadata Web Services Dbfetch Database fetch programmatic access Open Targets Protein structure prediction Colab notebooks RESTful API RESTful Web Services PDBe Ligand binding sites Protein families Protein functional analysis Protein sequences Data curation Biomolecular sequences Cytoscape PsyArXiv Psychology Bioactive data Drug-like molecules Biological studies Literature Neurodegenerative disorders Data sharing -
OnlineWorkshops and coursesA guide to exploring drug-like compounds and their biological targets using ChEMBL
12 May 2021
Online
Chemical biology Drug discovery Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Bioactivity data Drug-like compounds BioStudies Database EBI Search Finding data World Sight Day Eye development Eye disease Open software Metadata Web Services Dbfetch Database fetch programmatic access Open Targets Protein structure prediction Colab notebooks RESTful API RESTful Web Services PDBe Ligand binding sites Protein families Protein functional analysis Protein sequences Data curation Biomolecular sequences Cytoscape PsyArXiv Psychology Bioactive data Drug-like molecules -
OnlineWorkshops and coursesBioinformatics workflow management
29 November - 1 December 2021
Online
Workflows Bioinformatics bioinformatics FAIR Snakemake CWL Nextflow nf-core workflUX WESkit WES -
OnlineWorkshops and coursesTidy Trannscriptomics for Single-cel RNA Sequencing Analyses
18 February 2022 @ 13:00 - 15:00
Online
Workflows scRNA-seq Visualization R/Bioconductor -
OnlineWorkshops and coursesMathematical modelling as knowledge mapping in PhysiCell: a guided tour
26 April 2022
Online
Modelling and simulation Personalised medicine Computational biology Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling -
OnlineWorkshops and coursesWEBINAR: Portable, reproducible and scalable bioinformatics workflows using Nextflow and Pawsey Nimbus Cloud
20 September 2022 @ 12:00 - 13:00
Online
Bioinformatics Workflows Nextflow nf-core Reproducibility -
OnlineWorkshops and coursesWORKSHOP: RNA-Seq: reads to differential genes and pathways
27 September 2022 @ 14:00 - 17:00
Online
Bioinformatics Functional genomics Gene expression Workflows RNA-Seq Analysis Functional clustering Pathway analysis RNA-seq Gene Expression Nextflow nf-core Functional analysis
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