Scientific topics: Bioinformatics
Keywords: Transcriptomics or • New developments in techn... or drugdiscovery or Tumor biology and genetics or structural biology or polyploidy for plant and an... or Disease maps or Open Targets or bioinformatics or #bioinformatics hashtag#pan...
GOBLET/ELIXIR-EXCELERATE Workshop on e-learning
21 November 2017
Oeiras, PortugalGOBLET/ELIXIR-EXCELERATE Workshop on e-learning https://elixir.mf.uni-lj.si/course/view.php?id=28 https://tess.elixir-europe.org/events/goblet-elixir-excelerate-workshop-on-e-learning GOBLET/ELIXIR-EXCELERATE Workshop on e-learning, Nov 21, 2017 at the Gulbenkian Institute of Science, Oeiras, Portugal 2017-11-21 09:00:00 UTC 2017-11-21 17:00:00 UTC Instituto Gulbenkian, ELIXIR Portugal, GOBLET Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande, Oeiras, Portugal Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande Oeiras Portugal Bioinformatics Instituto Gulbenkian de Ciência  Researchersteachers workshops_and_courses registration_of_interest TeachingeLearningEeLPbioinformatics
9 - 13 September 2019
Oeiras , PortugalCPANG19 http://gtpb.igc.gulbenkian.pt/bicourses/2019/CPANG19/ https://tess.elixir-europe.org/events/cpang19 Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation as the number of sequenced genomes grows. In particular, they tend to bias us away from the observation of variation in the genomes we study. A general solution to this problem is to use a pangenome that incorporates both sequence and variation from many individuals as our reference system. This pangenome is naturally modelled as a graph with annotations and can provide all the functionality traditionally provided by linear reference genomes. Unlike linear reference genomes, a pangenome readily incorporates both small and large variation, allowing bias-free genotyping at known alleles. In this course we will explore the use of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types. Such techniques will aid any researcher working on organisms of high genetic diversity or on organisms lacking a high-quality reference genome. This course targets all researchers interested in learning about an exciting paradigm shift in computational genomics. Objectives Participants first will learn about limitations of linear reference-based methods and work through a brief refresher or introduction to standard approaches for processing sequencing data, including read alignment and variant calling. Provided these motivating examples, we will use data from a variety of relevant sources to develop an intuition about pangenomic methods and a practical familiarity with applicable tools. 2019-09-09 09:00:00 UTC 2019-09-13 17:00:00 UTC GTPB - IGC Oeiras , Portugal Oeiras Lisbon Portugal 2780-156 Oeiras Genomics Bioinformatics IGC - Instituto Gulbenkian de CiênciaBiodata.pt - Elixir's portuguese node of the european projec Pedro Fernandes email@example.com  Biologists and bioinformaticians. The course will be of particular interest to researchers investigating organisms without a reference genome or populations featuring high levels of genetic diversity. workshops_and_courses registration_of_interest #bioinformatics hashtag#pangenomics hashtag#data hashtag#analysis hashtag#genomicdata hashtag#genomics hashtag#course
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