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and Content provider: Birmingham Metabolomics Training Centre or ELIXIR Hungary or ELIXIR: The Czech Republic Node or European Bioinformatics Institute (EBI) or SciLifeLab
and Scientific topics: Biomolecular simulation or Experimental design and studies
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Face-to-faceWorkshops and coursesBioExcel summer school on biomolecular simulations 2019
30 June - 5 July 2019
Face-to-face
Biomolecular simulation Quantum mechanics/molecular mechanics QM/MM metadynamics free energy calculations molecular docking -
OnlineWorkshops and coursesBioStudies database: aggregating all outputs of a life sciences study
17 July 2019
Online
Data retrieval Literature and language Experimental design and studies Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Bioactivity data Drug-like compounds BioStudies Database EBI Search Finding data World Sight Day Eye development Eye disease Open software Metadata Web Services Dbfetch Database fetch programmatic access Open Targets Protein structure prediction Colab notebooks RESTful API RESTful Web Services PDBe Ligand binding sites Protein families Protein functional analysis Protein sequences Data curation Biomolecular sequences Cytoscape PsyArXiv Psychology Bioactive data Drug-like molecules Biological studies Literature Neurodegenerative disorders Data sharing Molecular visualisation Molecular structures Electron density maps EBI BioSamples Database BioSamples Data Use Ontology DUO ELIXIR Ensembl Variant Effect Predictor Variant Effect Predictor VEP Variation data Annotation SciLite annotation Text mining MGnify Microbiome Environment Proteomes Variant data Publications Citations UniProt Disease Portal ENA Sequence Search Reactome pathways database ReactomeGSA Pathway analysis Single cell RNA-seq Multiomics Data visualisation GitHub Graph database protein Gene function Mouse models IMPC Mammalian Phenotype Ontology Mouse knockouts Xenograft models Cancer EurOPDX InterProScan PDBe-KB Interpro API Europe PMC PubMed Protein function Preprints SARS-CoV-2 Genome browser Vertebrate genomes Comparative genomics Drug-like properties eQTL Catalogue Single Cell Expression Atlas SCEA Life cell by cell Introduction to single cell expression atlas PDX UniParc UniRef Genes GENCODE Gene annotation Clinical genomics Genome3D Genome annotations Protein domain prediction -
Face-to-faceWorkshops and coursesCABANA Workshop: NGS analysis applied to virome sequencing in agricultural systems
24 February - 4 March 2020
Costa Rica
Face-to-face
Sequencing Virology Experimental design and studies Genomics CABANA -
OnlineWorkshops and coursesBioExcel summer school on biomolecular simulations 2021
4 - 11 June 2021
Online
Molecular modelling Molecular dynamics Biomolecular simulation Proteins (proteins) Structures (structures) Quantum mechanics/molecular mechanics QM/MM metadynamics free energy calculations molecular docking -
OnlineWorkshops and coursesOpen access: Finding and accessing open data
20 October 2021
Online
Database search Bioinformatics Experimental design and studies Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Bioactivity data Drug-like compounds BioStudies Database EBI Search Finding data -
OnlineWorkshops and coursesBioExcel school on biomolecular simulations
25 March - 1 April 2022
Online
Biomolecular simulation Molecular modelling Molecular dynamics Proteins (proteins) Structures (structures) Quantum mechanics/molecular mechanics QM/MM Metadynamics Free energy calculations Molecular docking -
Face-to-faceWorkshops and coursesBioExcel summer school on biomolecular simulations 2022
12 - 17 June 2022
Italy
Face-to-face
Molecular modelling Molecular dynamics Biomolecular simulation Proteins (proteins) Structures (structures) Quantum mechanics/molecular mechanics QM/MM molecular docking Metadynamics Free energy calculations Molecular docking Machine learning -
OnlineWorkshops and coursesExploring reproducible and reusable systems biology models with BioModels
1 February 2023
Online
BioModel ID Biomolecular simulation Modelling and simulation Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models -
Face-to-faceWorkshops and coursesCCPBioSim workshop: structural bioinformatics resources and tools for molecular dynamics simulations
19 - 22 September 2023
United Kingdom
Face-to-face
Biomolecular simulation Gene structure UniProt: The Universal Protein Resource Proteins (proteins) Structures (structures) DNA & RNA (dna-rna)
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