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  • Data Carpentry Workshop 2020

    29 - 31 January 2020

    Heidelberg, Germany

    Data Carpentry Workshop 2020 https://tess.elixir-europe.org/events/educators-toby-hodges-florian-huber-thea-van-rossum-georg-zeller-hd-hub-fotis-e-psomopoulos-date-28-01-2019-30-01-2019-location-atc-computer-training-lab-contents-the-missing-step-between-data-collection-and-research-progress-is-a-lack-of-training-for-researchers-in-crucial-skills-for-effectively-managing-and-analysing-large-amounts-of-data-this-hands-on-workshop-teaches-researchers-the-fundamental-data-skills-they-need-to-conduct-their-work-and-provides-high-quality-domain-specific-training-covering-the-full-lifecycle-of-data-driven-research-the-domain-specific-approach-allows-participants-to-tailor-the-data-content-and-tools-to-reflect-the-specific-data-and-analysis-needs-of-different-areas-data-organisation-and-cleaning-introduction-to-r-data-analysis-and-visualisation-in-r-interacting-with-databases-from-r-data-analysis-with-applications-to-genomics-learning-goals-you-will-learn-how-to-organise-data-and-some-practices-for-more-effective-data-handling-to-effectively-clean-and-format-data-and-automatically-track-any-changes-to-use-r-to-handle-filter-and-summarise-tabular-data-to-use-the-split-apply-combine-concept-for-data-analysis-to-visualise-the-results-of-these-analyses-in-r-using-the-ggplot2-library-to-apply-all-of-the-concepts-in-an-exploratory-analysis-of-a-typical-biological-dataset-prerequisities-the-course-is-aimed-at-graduate-students-and-other-researchers-in-the-life-sciences-who-would-like-to-learn-good-practices-in-data-management-and-analysis-the-course-is-ideally-suited-to-students-without-prior-experience-in-computational-research-but-some-familiarity-with-working-with-tabular-data-on-a-computer-is-welcome-keywords-data-carpentry-r-tools-r Educators: Toby Hodges, Florian Huber, Thea Van Rossum, Georg Zeller, (HD-HuB) Fotis E. Psomopoulos Date: 28/01/2020 - 30/01/2020 Location: ATC Computer Training Lab Contents: The missing step between data collection and research progress is a lack of training for researchers in crucial skills for effectively managing and analysing large amounts of data. This hands on workshop teaches researchers the fundamental data skills they need to conduct their work, and provides high-quality, domain-specific training covering the full lifecycle of data-driven research. The domain-specific approach allows participants to tailor the data, content, and tools to reflect the specific data and analysis needs of different areas: - Data organisation and cleaning - Introduction to R - Data analysis and visualisation in R - Interacting with databases from R - Data analysis with applications to genomics Learning goals: You will learn... - how to organise data and some practices for more effective data handling - to effectively clean and format data and automatically track any changes - to use R to handle, filter, and summarise tabular data - to use the split-apply-combine concept for data analysis - to visualise the results of these analyses in R using the ggplot2 library - to apply all of the concepts in an exploratory analysis of a typical biological dataset Prerequisities: The course is aimed at graduate students and other researchers in the life sciences who would like to learn good practices in data management and analysis. The course is ideally suited to students without prior experience in computational research, but some familiarity with working with tabular data on a computer is welcome. Keywords: Data Carpentry, R Tools: R 2020-01-29 09:00:00 UTC 2020-01-31 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • 1st Hands-on Computational Enzyme Design Course

    2 - 5 February 2020

    Brno, Czechia

    1st Hands-on Computational Enzyme Design Course https://tess.elixir-europe.org/events/1st-hands-on-computational-enzyme-design-course-89570791-2caf-47ee-8553-85181cee128a Do you need to engineer your protein of interest? Do you wish to employ user-friendly one-stop-shop software tools for the design of mutations and libraries, but do not want to spend time on tedious installations? This three-day interactive course will provide the essential theory and hands-on experience on a number of web-based tools suitable for enzyme mining and engineering activity, specificity, enantioselectivity, stability, and solubility. You will have the chance to discuss with the developers of these tools the optimal way to set-up calculations and adequately interpret the results. Special time will be devoted to the proteins of interest of the individual participants. At the end of this three-day course, you will be able to independently design proteins for your academic research or commercial application. Covered software: AutoDock, Blast, Caver, Caver Analyst, CaverDock, CaverWeb, CalFitter, EnzymeMiner, FireProt, HotSpot Wizard, Rosetta, Solubis, SoluProt, Yasara, and VMD. Our web tools integrate individual software, and altogether, you will get automated access to more than 50 computational methods and 15 databases. 2020-02-02 15:00:00 UTC 2020-02-05 21:00:00 UTC FNUSA, ELIXIR CZ Kamenice 5, 5, Kamenice, Brno, Czechia Kamenice 5, 5, Kamenice Brno Brno-město Czechia Structural biology Molecular modelling Enzymes [] https://loschmidt.chemi.muni.cz/academy/#contact [] postdocsPhD students 30 workshops_and_courses first_come_first_served []
  • 1st Hands-on Computational Enzyme Design Course

    2 - 5 February 2020

    Brno, Czech Republic

    1st Hands-on Computational Enzyme Design Course https://tess.elixir-europe.org/events/1st-hands-on-computational-enzyme-design-course The three-day interactive course will provide the essential theory and hands-on experience on a number of web-based tools suitable for enzyme mining and engineering activity, specificity, enantioselectivity, stability, and solubility. Participants will have the chance to discuss the optimal way to set-up calculations and adequately interpret the results with the developers of these tools. Special time will be devoted to the proteins of interest of the individual participants. At the end of this three-day course, you will be able to independently design proteins for your academic research or commercial application. 2020-02-02 15:00:00 UTC 2020-02-05 20:00:00 UTC Loschmidt Laboratories, Masaryk University University Campus Bohunice, Masaryk University, Brno, Czech Republic, Brno, Czech Republic University Campus Bohunice, Masaryk University, Brno, Czech Republic Brno Brno Czech Republic [] jitkasedlackova@mail.muni.cz [] AcademiaIndustryPhD studentsUndergraduate students workshops_and_courses registration_of_interest bioinformaticsprotein engineeringenzyme miningsoftware tools
  • 5th Advanced in silico Drug Design workshop/challenge 2020

    3 - 7 February 2020

    Olomouc, Czech Republic

    5th Advanced in silico Drug Design workshop/challenge 2020 https://tess.elixir-europe.org/events/5th-advanced-in-silico-drug-design-workshop-challenge-2020 5ADD workshop/challenge (3.2.-7.2.2020) is focused on the use of in silico drug design tools and approaches in the drug design. We will cover both structure-based drug design (molecular docking, molecular dynamics, structural bioinformatics tools) and ligand-based drug design (QSAR, pharmacophores, deep learning) with lectures and on-hands tutorials. Last day you can try your skills on ligand selection challenge. 2020-02-03 12:00:00 UTC 2020-02-07 16:00:00 UTC Palacky University Olomouc, Olomouc, Czech Republic Palacky University Olomouc Olomouc Czech Republic 77146 [] [] [] [] [] []
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