Educators:
Guillaume Patoine, Steffen Neumann (CIBI, MASH)

Date:
22.10.2025 @ 14-16

Location:
Hybrid: Online and On-site @ Leibniz Institute of Plant Biochemistry, Weinberg 3, Halle

Information on travel and accommodation:
https://www.ipb-halle.de/en/contact/directions-for-visitors

Content & Learning goals:
MetaboLights is the most important open-access repository for metabolomics data, hosted by EMBL-EBI. It hosts high-quality metabolomics studies across species and techniques, enabling:

Curation and quality control of submitted data
Rich, standardized metadata that supports reproducibility
Easy metadata exploration and analysis for downstream research
Because of its curated content and powerful metadata structure, MetaboLights is the go-to platform for both data submission and data re-use in metabolomics.

We will guide you through the key features and practical use of MetaboLights in three 40-minute blocks:

Introduction & Submission: Overview of MetaboLights, How to prepare and submit your own data
Data Re-Use from MetaboLights: Retrieving and exploring datasets, Using Galaxy and MetaboAnalyst for downstream analysis
Bring Your Own Data: Hands-on session to apply what you’ve learned to your own datasets
Prerequisites:
Laptop, understanding in Metabolomics

Keywords:
Metabolomics, mass spectrometry,